miRBase entry: sma-mir-2c

Stem-loop sma-mir-2c


Accession
MI0021822
Description
Schistosoma mansoni sma-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
4 open access papers mention sma-mir-2c
(12 sentences)

Sequence

ggcgcaUCCCUUGUUCGACUGUGAUGUGuucgaaguaaacucaUAUCACAGCCGUGCUUAAGGGCuucgucaaaa
((((...(((((((.((.((((((((((.............)))))))))).)).))..)))))...))))....

Structure
----    caU     --  U  A          uucga 
    ggcg   CCCUU  GU CG CUGUGAUGUG     a
    ||||   |||||  || || ||||||||||     g
    cugc   GGGAA  CG GC GACACUAUac     u
aaaa    uuC     UU  U  C          ucaaa 


Annotation confidence Not enough data
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Genome context
Chr_5: 1982423-1982497 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-2c-5p

Accession MIMAT0025033
Description Schistosoma mansoni sma-miR-2c-5p mature miRNA
Sequence 7 - UCCCUUGUUCGACUGUGAUGUG - 28
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-2c-3p

Accession MIMAT0025034
Description Schistosoma mansoni sma-miR-2c-3p mature miRNA
Sequence 44 - UAUCACAGCCGUGCUUAAGGGC - 65
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402