miRBase entry: sma-mir-2e

Stem-loop sma-mir-2e


Accession
MI0021824
Description
Schistosoma mansoni sma-mir-2e precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
4 open access papers mention sma-mir-2e
(11 sentences)

Sequence

gcucuUACCAACUUUGACUGAGUUAUacugcuuuuguaagccuuguaUAUCACAGUCCAAGCUUUGGUaaguuuugguggguu
...(((((((((((.(((((.(.(((((.((((....))))...))))).).))))).)))..))))))))............

Structure
---------gcu        --   U     A U     --u    u 
            cuUACCAA  CUU GACUG G UAUac   gcuu u
            ||||||||  ||| ||||| | |||||   ||||  
            gaaUGGUU  GAA CUGAC C AUaug   cgaa g
uugggugguuuu        UC   C     A U     uuc    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr_W: 22875945-22876027 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-2e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-2e-5p

Accession MIMAT0025036
Description Schistosoma mansoni sma-miR-2e-5p mature miRNA
Sequence 6 - UACCAACUUUGACUGAGUUAU - 26
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-2e-3p

Accession MIMAT0025037
Description Schistosoma mansoni sma-miR-2e-3p mature miRNA
Sequence 48 - UAUCACAGUCCAAGCUUUGGU - 68
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402