Stem-loop sma-mir-36a

Accession

MI0021828

Description

Schistosoma mansoni sma-mir-36a precursor miRNA

Gene family

MIPF0000096; mir-36

Literature search

3 open access papers mention sma-mir-36a
(4 sentences)

Sequence

gguauaucuuguGAAGAGUGCCGACCCGGUUAGCCauuagauuauuguuaaagaaacguggCCACCGGGUAGACAUUCAUUCGCaggauauuuc
...(((((((((((((((((.(.(((((((..(((((....................))))).))))))).).))))).))))))))))))...

Structure

ggu            -     C G       UA     uagauuauu 
   auaucuuguGAA GAGUG C ACCCGGU  GCCau         g
   |||||||||||| ||||| | |||||||  |||||          
   uauaggaCGCUU CUUAC G UGGGCCA  Cggug         u
cuu            A     A A       -C     caaagaaau 

Annotation confidence Not enough data

Genome context

Chr_1: 57476968-57477061 [-]

Mature sma-miR-36a-3p

• Accession: MIMAT0025041
• Description: Schistosoma mansoni sma-miR-36a-3p mature miRNA
• Sequence: 62 - CCACCGGGUAGACAUUCAUUCGC - 84
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-36a-5p

• Accession: MIMAT0032137
• Description: Schistosoma mansoni sma-miR-36a-5p mature miRNA
• Sequence: 13 - GAAGAGUGCCGACCCGGUUAGCC - 35
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402