Stem-loop sequence mmu-mir-130c

Accession

MI0021917 (change log)

Symbol

MGI:Mir130c

Description

Mus musculus miR-130c stem-loop

Literature search

30 open access papers mention mmu-mir-130c
(56 sentences)

Stem-loop

   -      g      ----    aaa  uc ccu    -    gug 
5'  guuacg uuugga    ugua   ug  c   gcag guuu   u
    |||||| ||||||    ||||   ||  |   |||| ||||   g
3'  cagugu gaaccu    acgu   ac  g   uguc caga   u
   u      g      ugua    --g  cu ---    u    aac 

Deep sequencing

192 reads, 0 reads per million, 41 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr9: 53400805-53400886 [-]
• Overlapping transcripts:

  antisense

  ENSMUST00000037853 ; Kdelc2-201; exon 8

Database links

• MGI:Mir130c
• miRBase Tracker:MI0021917

Mature sequence mmu-miR-130c

• Accession: MIMAT0025132
• Sequence: 58 - cagugcaauguuccaaggugug - 79
• Deep sequencing: 189 reads, 40 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-130c
  • miRDB:mmu-miR-130c

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).