Stem-loop sequence mmu-mir-6396

Accession

MI0021931 (change log)

Symbol

MGI:Mir6396

Description

Mus musculus miR-6396 stem-loop

Stem-loop

   -a    ug         g    ag  -a       -agac   a  g        ga 
5'   cagg  acuaggggc aagg  cc  gugcuuc     cuc ga gccucucu  c
     ||||  ||||||||| ||||  ||  |||||||     ||| || ||||||||   
3'   gucc  ugauccucg uucc  gg  cauggag     ggg cu uggagggg  u
   ag    --         a    gg  ac       aggac   c  a        ga 

Deep sequencing

6 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 122622265-122622375 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000048864 ; Pabpn1l-001; intron 1

  ENSMUST00000093059 ; Pabpn1l-001; intron 1

  antisense

  OTTMUST00000064647 ; AC114005.5-001; intron 1

  ENSMUST00000127664 ; Gm20388-001; intron 1

Database links

• MGI:Mir6396
• miRBase Tracker:MI0021931

Mature sequence mmu-miR-6396

• Accession: MIMAT0025147
• Sequence: 88 - ggggccuuagcuccuaguccugga - 111
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6396
  • miRDB:mmu-miR-6396

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).