Stem-loop sequence mmu-mir-6397

Accession

MI0021933 (change log)

Symbol

MGI:Mir6397

Description

Mus musculus miR-6397 stem-loop

Stem-loop

   -       --cucc    aau  u         aa   u   ua   a 
5'  gcagucu      cuca   uc cacugaaag  ucc gga  ugc u
    |||||||      ||||   || |||||||||  ||| |||  ||| g
3'  cgucgga      gagu   ag gugacuuuc  agg cuu  gcg a
   u       aaaucu    --g  -         ag   u   ua   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr4: 108087357-108087449 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000021547 ; Scp2-003; intron 4

  OTTMUST00000021546 ; Scp2-002; intron 7

  OTTMUST00000021471 ; Scp2-001; intron 8

  ENSMUST00000044248 ; Podn-201; intron 1

  ENSMUST00000135379 ; Scp2-003; intron 4

  ENSMUST00000149106 ; Scp2-002; intron 7

  ENSMUST00000030340 ; Scp2-001; intron 8

Database links

• MGI:Mir6397
• miRBase Tracker:MI0021933

Mature sequence mmu-miR-6397

• Accession: MIMAT0025149
• Sequence: 58 - uggagacuuucaguggaguga - 78
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6397
  • miRDB:mmu-miR-6397

References

1. PMID:22319597 "Complexity of murine cardiomyocyte miRNA biogenesis, sequence variant expression and function" Humphreys DT, Hynes CJ, Patel HR, Wei GH, Cannon L, Fatkin D, Suter CM, Clancy JL, Preiss T PLoS One. 7:e30933(2012).