miRBase entry: ptc-MIR6461

Stem-loop ptc-MIR6461


Accession
MI0021967
Description
Populus trichocarpa ptc-MIR6461 precursor miRNA


Sequence

aguuauucuuagagaguuuuuuagacucaaguucugauccauguacuggcuaguugguuuuccuuuugaaaacUAGCUAGCAAGUUCAUGGAUCggaacucucagucugaaaaaacugaugagcu
.......((((...(((((((((((((..((((((((((((((.(((.((((((((((((((.....)))))))))))))).))).))))))))))))))...)))))).)))))))..))))..

Structure
aguuauu    gag       -      -ca              u   g              c 
       cuua   aguuuuu uagacu   aguucugauccaug acu gcuaguugguuuuc u
       ||||   ||||||| ||||||   |||||||||||||| ||| |||||||||||||| u
       gagu   ucaaaaa gucuga   ucaaggCUAGGUAC UGA CGAUCGAUcaaaag u
-----uc    -ag       a      cuc              U   A              u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000339.2: 16752332-16752456 [+]

Database links

Mature ptc-miR6461

Accession MIMAT0025187
Description Populus trichocarpa ptc-miR6461 mature miRNA
Sequence 74 - UAGCUAGCAAGUUCAUGGAUC - 94
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034