Stem-loop ptc-MIR6440c

Accession

MI0021977

Description

Populus trichocarpa ptc-MIR6440c precursor miRNA

Sequence

ccGAGUUUGAUCGAUUUCGAGUUuuuaacccgauuucacacguacucguaaaaucguacgauuuuacgaguuaacucguaauuugacaacauugg
((((..(((.((((.((((((((.......((........)).((((((((((((....)))))))))))).)))))).)).)))))))..))))

Structure

    GU   A    U  -      uuuaacccgauuucacacgu            g 
ccGA  UUG UCGA UU CGAGUU                    acucguaaaauc u
||||  ||| |||| || ||||||                    ||||||||||||  
gguu  aac aguu aa gcucaa                    ugagcauuuuag a
    ac   -    u  u      -------------------u            c 

Annotation confidence Not enough data

Genome context

CM000341.2: 9126952-9127046 [+]

Mature ptc-miR6440c

• Accession: MIMAT0025200
• Description: Populus trichocarpa ptc-miR6440c mature miRNA
• Sequence: 3 - GAGUUUGAUCGAUUUCGAGUU - 23
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034