Stem-loop sequence ptc-MIR482c

Accession

MI0022048 (change log)

Description

Populus trichocarpa miR482c stem-loop

Gene family

MIPF0000403; MIR482

Literature search

7 open access papers mention ptc-MIR482c
(123 sentences)

Stem-loop

      ucc  cg        ----------   -        acu   uu        -  uc           a   -g    u      gaaag 
5' ucc   gc  uguuggaa          agg aaagggag   gcu  acuggaag cu  cgguaugggag ggc  ggaa gacucu     a
   |||   ||  ||||||||          ||| ||||||||   |||  |||||||| ||  ||||||||||| |||  |||| ||||||     a
3' agg   cg  acgaccuu          uuc uuucccuc   uga  ugaccuuu ga  gccauacccuc cug  ccuu cugaga     c
      ucu  --        aucacuucua   a        -cu   --        a  -c           -   ag    u      agauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000353.2: 13549387-13549557 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007AED79_3694
• miRBase Tracker:MI0022048

Mature sequence ptc-miR482c-5p

• Accession: MIMAT0025277
• Sequence: 53 - uaugggagaggcgggaaugacu - 74
• Evidence: experimental; miRNAseq [1]

Mature sequence ptc-miR482c-3p

• Accession: MIMAT0025278
• Sequence: 94 - ucuuuccgaguccucccauacc - 115
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).