Stem-loop gga-mir-222b

Accession

MI0022373

Description

Gallus gallus gga-mir-222b precursor miRNA

Literature search

20 open access papers mention gga-mir-222b
(144 sentences)

Sequence

8787 reads, 95 reads per million, 5 experiments

gagacacggugcccuuggcUGCUCAGUAGUCAGUGUAGGAUCUGUccgacagucucacuaacAGCUACAUCUGAUUACUGGGUCACcaaaggaccaccaccgcgcugcaug
.((.(.(((((((.((((..((((((((((((((((((...((((...............))))))))).)))))))))))))..)))).)).....))))).))).....

Structure

----g  a a     -----  c    cU             -     GAU    ccgaca 
     ag c cggug     cc uugg  GCUCAGUAGUCAG UGUAG   CUGU      g
     || | |||||     || ||||  ||||||||||||| |||||   ||||      u
     uc g gccac     gg aacC  UGGGUCAUUAGUC ACAUC   GAca      c
guacg  - c     cacca  a    AC             U     ---    aucacu 

Annotation confidence Medium

Genome context

Unknown

Mature gga-miR-222b-5p

• Accession: MIMAT0025617
• Description: Gallus gallus gga-miR-222b-5p mature miRNA
• Sequence: 20 - UGCUCAGUAGUCAGUGUAGGAUCUGU - 45
• Evidence: experimental ; Illumina [1]

Mature gga-miR-222b-3p

• Accession: MIMAT0025618
• Description: Gallus gallus gga-miR-222b-3p mature miRNA
• Sequence: 63 - AGCUACAUCUGAUUACUGGGUCAC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227