Stem-loop sequence gga-mir-365b

Accession

MI0022403 (change log)

Description

Gallus gallus miR-365b stem-loop

Literature search

5 open access papers mention gga-mir-365b
(16 sentences)

Stem-loop

   cacagaagaa       -a   caauaa        a      uuau   a    aa 
5'           uacugca  gag      ggauuuuu ggggca    gau gugu  u
             |||||||  |||      |||||||| ||||||    ||| ||||  g
3'           auggcgu  cuu      ccugaaaa ccccgu    cua caca  g
   -uaccgagaa       cc   uuacuc        c      ----   -    aa 

Deep sequencing

20 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr14: 769102-769211 [-]
• Overlapping transcripts:

  antisense

  ENSGALT00000004821 ; intron 2

Clustered miRNAs

< 10kb from gga-mir-365b

• gga-mir-365-1: chr14: 769114-769198 [+]
• gga-mir-365b: chr14: 769102-769211 [-]
• gga-mir-193b: chr14: 764296-764378 [+]
• gga-mir-6686: chr14: 759895-760004 [+]

Database links

• miRBase Tracker:MI0022403

Mature sequence gga-miR-365b-5p

• Accession: MIMAT0025674
• Sequence: 27 - aggauuuuuaggggcauuauga - 48
• Deep sequencing: 19 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-365b-5p
  • miRDB:gga-miR-365b-5p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).