Stem-loop gga-mir-365b

Accession

MI0022403

Description

Gallus gallus gga-mir-365b precursor miRNA

Literature search

5 open access papers mention gga-mir-365b
(16 sentences)

Sequence

697 reads, 1 reads per million, 5 experiments

cacagaagaauacugcaagagcaauaAGGAUUUUUAGGGGCAUUAUGAuaguguaauggaaacacaucugcccccaaaagucccucauuuucccugcgguaaagagccau
..........(((((((.(((......((((((((.((((((....(((.((((.......))))))))))))).))))))))......)))..))))))).........

Structure

cacagaagaa       -a   caauaA        A      UUAU   a    aa 
          uacugca  gag      GGAUUUUU GGGGCA    GAu gugu  u
          |||||||  |||      |||||||| ||||||    ||| ||||  g
          auggcgu  cuu      ccugaaaa ccccgu    cua caca  g
-uaccgagaa       cc   uuacuc        c      ----   -    aa 

Annotation confidence Not enough data

Genome context

chr14: 769102-769211 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-365b

Mature gga-miR-365b-5p

• Accession: MIMAT0025674
• Description: Gallus gallus gga-miR-365b-5p mature miRNA
• Sequence: 27 - AGGAUUUUUAGGGGCAUUAUGA - 48
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227