Stem-loop sequence gga-mir-6516

Accession

MI0022520 (change log)

Description

Gallus gallus miR-6516 stem-loop

Gene family

MIPF0001672; mir-6516

Literature search

1 open access papers mention gga-mir-6516
(1 sentences)

Stem-loop

   agaggucccccugcuggguuccuccua       a  g ug   g    --c     
5'                            ugcagua ca g  uga cauc   augc 
                              ||||||| || |  ||| ||||   ||| a
3'                            acgucau gu u  acu guag   uacg 
   -aaccgacuucugucguugagcaacac       a  a gu   g    ucu     

Deep sequencing

131 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr18: 4170788-4170897 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000002662 ; intron 1

  ENSGALT00000042503 ; SCARNA16-201; exon 1

Database links

• RNAcentral:URS000075E40A_9031
• miRBase Tracker:MI0022520

Mature sequence gga-miR-6516-5p

• Accession: MIMAT0025806
• Sequence: 27 - augcaguaacaggugugagcau - 48
• Deep sequencing: 27 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000759AEC_9031
• Predicted targets:
  • TargetScanVert:gga-miR-6516-5p
  • miRDB:gga-miR-6516-5p

Mature sequence gga-miR-6516-3p

• Accession: MIMAT0025807
• Sequence: 69 - cauguaugauacugcacacaacg - 91
• Deep sequencing: 102 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-6516-3p
  • miRDB:gga-miR-6516-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).