Stem-loop sequence hsa-mir-6878

Accession

MI0022725 (change log)

Symbol

HGNC:MIR6878

Description

Homo sapiens miR-6878 stem-loop

Literature search

1 open access papers mention hsa-mir-6878
(3 sentences)

Stem-loop

   augaga         cu   a   ga  a uc  a 
5'       gggagaaag  aga gcu  ag u  ug a
         |||||||||  ||| |||  || |  || a
3'       uccucuuuc  ucu cgg  uc a  ac a
   ----ga         -u   c   --  a uc  u 

Deep sequencing

58 reads, 69.4 reads per million, 36 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 150492345-150492410 [+]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR6878
• miRBase Tracker:MI0022725

Mature sequence hsa-miR-6878-5p

• Accession: MIMAT0027656
• Sequence: 6 - agggagaaagcuagaagcugaag - 28
• Deep sequencing: 25 reads, 19 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6878-5p
  • miRDB:hsa-miR-6878-5p

Mature sequence hsa-miR-6878-3p

• Accession: MIMAT0027657
• Sequence: 46 - cuggccucuucuuucuccuag - 66
• Deep sequencing: 15 reads, 14 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6878-3p
  • miRDB:hsa-miR-6878-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).