Stem-loop mdo-mir-1540b

Accession

MI0024041

Description

Monodelphis domestica mdo-mir-1540b precursor miRNA

Gene family

MIPF0001772; mir-1540

Sequence

10214 reads, 201 reads per million, 5 experiments

GAUUCCAUGGAGCAUAUGCUCUggcucucuggggauggACAUGCGCUCUAUGGAAUCAC
(((((((((((((.((((.(((..(((....)))..))))))).)))))))))))))..

Structure

--             A    C   gg   u 
  GAUUCCAUGGAGC UAUG UCU  cuc c
  ||||||||||||| |||| |||  |||  
  CUAAGGUAUCUCG GUAC Agg  ggg u
CA             C    -   ua   g 

Annotation confidence High

Genome context

chr1: 580149267-580149325 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1540b

Mature mdo-miR-1540b-5p

• Accession: MIMAT0028938
• Description: Monodelphis domestica mdo-miR-1540b-5p mature miRNA
• Sequence: 1 - GAUUCCAUGGAGCAUAUGCUCU - 22
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1540b-3p

• Accession: MIMAT0028939
• Description: Monodelphis domestica mdo-miR-1540b-3p mature miRNA
• Sequence: 39 - ACAUGCGCUCUAUGGAAUCAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45