Stem-loop mes-MIR160f

Accession

MI0024226

Description

Manihot esculenta mes-MIR160f precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

7 open access papers mention mes-MIR160f
(23 sentences)

Sequence

uuguuccUGCCUGGCUCCCUGAAUGCCAucuaagaagcuugucaaaggauguuggcaaccuuccuacuuggcaugaggggagucaugcaggcucaa
.((..(((((.(((((((((..((((((..((.((((.(((((((......))))))).)))).))..))))))..))))))))).)))))..)).

Structure

u  uu     C         GA      uc  a    c       ag 
 ug  ccUGC UGGCUCCCU  AUGCCA  ua gaag uugucaa  g
 ||  ||||| |||||||||  ||||||  || |||| |||||||   
 ac  ggacg acugagggg  uacggu  au cuuc aacgguu  a
a  uc     u         ag      uc  c    c       gu 

Annotation confidence Not enough data

Genome context

scaffold02255: 67959-68054 [+]

Mature mes-miR160f

• Accession: MIMAT0029184
• Description: Manihot esculenta mes-miR160f mature miRNA
• Sequence: 8 - UGCCUGGCUCCCUGAAUGCCA - 28
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85