Stem-loop mes-MIR166j

Accession

MI0024243

Description

Manihot esculenta mes-MIR166j precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

6 open access papers mention mes-MIR166j
(20 sentences)

Sequence

uugaggggaauguugucugguucaaggucaugugaagcuacuuggucaucuuuuuuagcuaguuugaucuccUCGGACCAGGCUUCAUUCCucucaa
.(((((((((((..(((((((((.(((....((.((((((.((((.........)))).)))))).))..))).)))))))))..))))))))))).

Structure

u           uu         a   ucau  g      c    uca 
 ugaggggaaug  gucugguuc agg    gu aagcua uugg   u
 |||||||||||  ||||||||| |||    || |||||| ||||   c
 acucuCCUUAC  CGGACCAGG Ucc    ua uuugau gauu   u
a           UU         C   --uc  g      c    uuu 

Annotation confidence Not enough data

Genome context

scaffold02895: 16886-16982 [-]

Mature mes-miR166j

• Accession: MIMAT0029201
• Description: Manihot esculenta mes-miR166j mature miRNA
• Sequence: 73 - UCGGACCAGGCUUCAUUCC - 91
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85