Stem-loop mes-MIR169p

Accession

MI0024266

Description

Manihot esculenta mes-MIR169p precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169p
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGcuccugcucauacuaggguugcugguauacaagugcagcccuugaguguagguuucaggcagucaccuuggcuaa
(((((((((.(((((.(((((..((((((((....((((((((............)))))))))))))..)))...))))))))))))))))))).

Structure

-         A     U     -cu   --     uacu        uggua 
 UAGCCAAGG UGACU GCCUG   ccu  gcuca    aggguugc     u
 ||||||||| ||||| |||||   |||  |||||    ||||||||      
 aucgguucc acuga cggac   gga  ugagu    ucccgacg     a
a         -     -     uuu   ug     ----        ugaac 

Annotation confidence Not enough data

Genome context

scaffold05005: 2236-2331 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from mes-MIR169p

Mature mes-miR169p

• Accession: MIMAT0029224
• Description: Manihot esculenta mes-miR169p mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUG - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269