Stem-loop mes-MIR169q

Accession

MI0024267

Description

Manihot esculenta mes-MIR169q precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169q
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGauuuccuagcauuuuggguuguggcuugcaacaauguuuauacaaauuuaacccuugaugcagguucucaggcagucuccuuggcuaa
((((((((((.((((.((((((...(((.(((((..((((((((....(((....)))...))))......))))..))))))))...)))))))))))))))))))).

Structure

-          U    U      uuu   a     uu    ------    gcuu   a 
 UAGCCAAGGA GACU GCCUGa   ccu gcauu  gggu      ugug    gca c
 |||||||||| |||| ||||||   ||| |||||  ||||      ||||    |||  
 aucgguuccu cuga cggacu   gga cguag  ccca      acau    ugu a
a          -    -      cuu   -     uu    auuuaa    -auu   a 

Annotation confidence Not enough data

Genome context

scaffold05005: 6485-6593 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mes-MIR169q

Mature mes-miR169q

• Accession: MIMAT0029225
• Description: Manihot esculenta mes-miR169q mature miRNA
• Sequence: 1 - UAGCCAAGGAUGACUUGCCUG - 21
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269