miRBase entry: mes-MIR171e

Stem-loop mes-MIR171e


Accession
MI0024283
Description
Manihot esculenta mes-MIR171e precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention mes-MIR171e
(17 sentences)

Sequence

aggaaagcgauauuggugagguucaauccgaugacggauuuacacauugaguauuguaaaagacgaucucagaUUGAGCCGCGCCAAUAUCACUuucuu
.((((((.((((((((((.(((((((((.((.((((..(((..(((........))).)))..)).)))).))))))))).)))))))))).)))))).

Structure
a      c          a         c  u  -  ga   ac   uug 
 ggaaag gauauuggug gguucaauc ga ga cg  uuu  aca   a
 |||||| |||||||||| ||||||||| || || ||  |||  |||    
 ucuuUC CUAUAACCGC CCGAGUUag cu cu gc  aaa  ugu   g
u      A          G         a  -  a  ag   -a   uau 


Annotation confidence Not enough data
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Genome context
scaffold11970: 74033-74131 [+]

Database links

Mature mes-miR171e

Accession MIMAT0029241
Description Manihot esculenta mes-miR171e mature miRNA
Sequence 74 - UUGAGCCGCGCCAAUAUCACU - 94
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85