miRBase entry: mes-MIR171h

Stem-loop mes-MIR171h


Accession
MI0024286
Description
Manihot esculenta mes-MIR171h precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention mes-MIR171h
(16 sentences)

Sequence

uugaaagugccauugugauguuggcucgguucacucagacaaauuacuauguuuuacuacaagcauguuauggucuuUGAUUGAGCCGUGCCAAUAUCuuagugcucuuucaa
.((((((.((.((((.(((((((((.(((((((.((((((.....((.((((((......))))))))....)))..))).))))))).))))))))).)))))).)))))).

Structure
u      u  c    u         u       c   --   aaauu  u      ua 
 ugaaag gc auug gauguuggc cgguuca uca  gac     ac auguuu  c
 |||||| || |||| ||||||||| ||||||| |||  |||     || ||||||   
 acuuuc cg ugau CUAUAACCG GCCGAGU AGU  cug     ug uacgaa  u
a      u  -    u         U       U   uu   -guau  -      ca 


Annotation confidence Not enough data
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Genome context
scaffold09683: 88279-88391 [-]

Database links

Mature mes-miR171h

Accession MIMAT0029244
Description Manihot esculenta mes-miR171h mature miRNA
Sequence 78 - UGAUUGAGCCGUGCCAAUAUC - 98
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269