Stem-loop sequence mes-MIR171h

Accession

MI0024286 (change log)

Description

Manihot esculenta miR171h stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention mes-MIR171h
(16 sentences)

Stem-loop

   u      u  c    u         u       c   --   aaau  c       ua 
5'  ugaaag gc auug gauguuggc cgguuca uca  gac    ua uauguuu  c
    |||||| || |||| ||||||||| ||||||| |||  |||    || |||||||   
3'  acuuuc cg ugau cuauaaccg gccgagu agu  cug    au guacgaa  u
   a      u  -    u         u       u   uu   --gu  u       ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold09683: 88279-88391 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0024286

Mature sequence mes-miR171h

• Accession: MIMAT0029244
• Sequence: 78 - ugauugagccgugccaauauc - 98
• Evidence: not experimental

References

1. PMID:22388699 "Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)" Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J Mol Biotechnol. 53:257-269(2013).