miRBase entry: mes-MIR172f

Stem-loop mes-MIR172f


Accession
MI0024294
Description
Manihot esculenta mes-MIR172f precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
4 open access papers mention mes-MIR172f
(8 sentences)

Sequence

uugcugauggagcaucaucaagauucacacacuuuauccagggcuaguggaguagaaguuuaugguggcuuuucuuggucgcuuuugcuucaauccaaacggcccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggcaa
.(((((.((.((((((((((((((((.(.((...((((.((((((..((((...(((((....(((((((......)))))))...)))))..))))...))))))..))))))))))))))))))))))).)).))))).

Structure
u     a  g                a a  cuu    -c      -ag    gua     uuau       uu 
 ugcug ug agcaucaucaagauuc c ca   uauc  agggcu   ugga   gaagu    gguggcu  u
 ||||| || |||||||||||||||| | ||   ||||  ||||||   ||||   |||||    |||||||   
 acggc AC UCGUAGUAGUUCUAAG G gu   auag  ucccgg   accu   cuucg    ucgcugg  c
a     G  G                - -  ---    uu      caa    -aa     -uuu       uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold03293: 1349-1489 [+]

Database links

Mature mes-miR172f

Accession MIMAT0029252
Description Manihot esculenta mes-miR172f mature miRNA
Sequence 115 - GGAAUCUUGAUGAUGCUGCAG - 135
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269