miRBase entry: mes-MIR393b

Stem-loop mes-MIR393b


Accession
MI0024305
Description
Manihot esculenta mes-MIR393b precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention mes-MIR393b
(18 sentences)

Sequence

gcaacuagaggagacaUCCAAAGGGAUCGCAUUGAUCCuaagcucuucuucucuccccguauuuuaaucuuuuggaucaugcuaucccuuuggauuccuccuuugguagc
((.((((((((((..((((((((((((.((((.(((((...................................))))))))).))))))))))))..)))))))))).))

Structure
  a          ac            C    U     uaagcucuucuucucu 
gc acuagaggag  aUCCAAAGGGAU GCAU GAUCC                c
|| ||||||||||  |||||||||||| |||| |||||                c
cg ugguuuccuc  uagguuucccua cgua cuagg                c
  a          cu            u    -     uuuucuaauuuuaugc 


Annotation confidence Not enough data
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Genome context
scaffold08265: 2433536-2433645 [+]

Database links

Mature mes-miR393b

Accession MIMAT0029263
Description Manihot esculenta mes-miR393b mature miRNA
Sequence 17 - UCCAAAGGGAUCGCAUUGAUCC - 38
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269