miRBase entry: mes-MIR393c

Stem-loop mes-MIR393c


Accession
MI0024306
Description
Manihot esculenta mes-MIR393c precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
4 open access papers mention mes-MIR393c
(18 sentences)

Sequence

uuagugcaggguggagaguUCCAAAGGGAUCGCAUUGAUCUgaugauuucugcugauucgucucaaugaucguuaaucaucauuuuuguucauuggaucaugcgaucccuuuagaauuuuccaccacuugcucuaa
.(((.((((((((((((((((.(((((((((((((.((((((((((....((.(((((((((.....)).))..))))).)).......))))))))))))))))))))))).)))))))))))).).))).))).

Structure
u   u   - -            C             U          ---uuuc  c     --  -  u 
 uag gca g gguggagaguUC AAAGGGAUCGCAU GAUCUgauga       ug ugauu  cg uc c
 ||| ||| | |||||||||||| ||||||||||||| ||||||||||       || |||||  || || a
 auc cgu c ccaccuuuuaag uuucccuagcgua cuagguuacu       ac acuaa  gc ag a
a   u   u a            a             -          uguuuuu  u     uu  u  u 


Annotation confidence Not enough data
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Genome context
scaffold11425: 152114-152249 [+]

Database links

Mature mes-miR393c

Accession MIMAT0029264
Description Manihot esculenta mes-miR393c mature miRNA
Sequence 20 - UCCAAAGGGAUCGCAUUGAUCU - 41
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269