Stem-loop mes-MIR530b

Accession

MI0024341

Description

Manihot esculenta mes-MIR530b precursor miRNA

Gene family

MIPF0000521; MIR530

Literature search

1 open access papers mention mes-MIR530b
(3 sentences)

Sequence

gccaaaauguugccuuuaucUGCAUUUGCACCUGCACCUUAcuuuuguuucuuuaaaaauuucaacaaucaagauccuuguuuuuccucucauuucuagagugucagagaaacuuuuugauccaagaaaagagaggugcagguguaagugcaggugaaugccauuuuggu
(((((((((..((.((((((((((((((((((((((((((.(((((.((...(((((((....................(((((((....(((((...)))))...))))))))))))))...)).))))).)))))))))))))))))))))))))).)))))))))))

Structure

         uu  c                          A     g  ucu       uuucaacaaucaagauccuu       cucu     c 
gccaaaaug  gc uuuaucUGCAUUUGCACCUGCACCUU cuuuu uu   uuaaaaa                    guuuuuc    cauuu  
|||||||||  || |||||||||||||||||||||||||| ||||| ||   |||||||                    |||||||    ||||| u
ugguuuuac  cg aaguggacgugaauguggacguggag gaaaa aa   aguuuuu                    caaagag    gugag  
         --  u                          a     g  ccu       --------------------       -acu     a 

Annotation confidence Not enough data

Genome context

scaffold04182: 393762-393931 [+]

Mature mes-miR530b

• Accession: MIMAT0029299
• Description: Manihot esculenta mes-miR530b mature miRNA
• Sequence: 21 - UGCAUUUGCACCUGCACCUUA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269


2. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85