Stem-loop ptc-MIR6459b

Accession

MI0025496

Description

Populus trichocarpa ptc-MIR6459b precursor miRNA

Literature search

1 open access papers mention ptc-MIR6459b
(1 sentences)

Sequence

aagaagacaaUCUCAAGCCCAAAUUCGAUCugacuuugccgguaccuuguuaagcaagaucgaauuugugcuugagcucgacuucua
.(((((.....(((((((.((((((((((((..(((.((.((...)).)).)))..)))))))))))).))))))).....))))).

Structure

a     acaaU       C            ga   u  c  u 
 agaag     CUCAAGC CAAAUUCGAUCu  cuu gc gg  
 |||||     ||||||| ||||||||||||  ||| || || a
 ucuuc     gaguucg guuuaagcuaga  gaa ug uc  
a     agcuc       u            ac   u  u  c 

Annotation confidence Not enough data

Genome context

CM000339.2: 9383296-9383382 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR6459b

Mature ptc-miR6459b

• Accession: MIMAT0030396
• Description: Populus trichocarpa ptc-miR6459b mature miRNA
• Sequence: 11 - UCUCAAGCCCAAAUUCGAUC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233