miRBase entry: 23570526

Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis

PubMed ID 23570526
Authors Shuai P, Liang D, Zhang Z, Yin W, Xia X
Journal BMC Genomics
Volume 14
Pages 233

There are 170 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
ptc-MIR6421 MI0021962 None CM000337.2 5198860 5198978 - -
ptc-MIR6459a MI0021965 None CM000339.2 9383289 9383389 + -
ptc-MIR6460 MI0021966 None CM000339.2 14915421 14915568 + -
ptc-MIR6462a MI0021968 None CM000340.2 2221706 2221837 + -
ptc-MIR6463 MI0021969 None CM000340.2 6132645 6132830 + -
ptc-MIR6438b MI0021975 None CM000341.2 1237589 1237811 + -
ptc-MIR6468 MI0021978 None CM000341.2 21920795 21920945 - -
ptc-MIR6462b MI0021981 None CM000341.2 24270125 24270257 + -
ptc-MIR6462c MI0021982 None CM000341.2 24280110 24280242 + -
ptc-MIR6474 MI0021988 None CM000344.2 207756 207860 - -
ptc-MIR6480 MI0021997 None CM000345.2 10834993 10835094 + -
ptc-MIR6462d MI0021998 None CM000341.2 24265932 24266064 + -
ptc-MIR6430 MI0022004 None CM000337.2 34025493 34025631 + -
ptc-MIR482d MI0022007 None CM000346.2 12814668 12814838 - -
ptc-MIR6422 MI0022008 None CM000337.2 5941971 5942068 + -
ptc-MIR6445a MI0022020 None CM000348.2 7706152 7706293 - -
ptc-MIR6445b MI0022028 None CM000351.2 8556696 8556839 + -
ptc-MIR477c MI0022029 None CM000351.2 12329499 12329608 - -
ptc-MIR536 MI0022032 None CM000337.2 10455706 10455793 - -
ptc-MIR3627a MI0022035 None CM000353.2 10902822 10902937 + -
ptc-MIR482b MI0022043 None CM000341.2 11901546 11901695 - -
ptc-MIR477d MI0022047 None CM000351.2 12480540 12480666 + -
ptc-MIR7812 MI0025471 None CM000350.2 13399032 13399142 - -
ptc-MIR7814 MI0025472 None CM000352.2 10809578 10809788 + -
ptc-MIR7815 MI0025473 None CM000340.2 10873191 10873312 - -
ptc-MIR7816 MI0025474 None CM000340.2 20884831 20884933 + -
ptc-MIR6462e MI0025475 None CM000341.2 24266243 24266355 + -
ptc-MIR6462f MI0025476 None CM000341.2 24270440 24270552 + -
ptc-MIR7817a MI0025477 None CM000351.2 1581044 1581277 - -
ptc-MIR7818 MI0025478 None None None -
ptc-MIR7817b MI0025479 None CM000337.2 15618173 15618365 + -
ptc-MIR7820 MI0025480 None CM000342.2 6189111 6189190 - -
ptc-MIR7822 MI0025481 None CM000341.2 17113917 17114027 + -
ptc-MIR7823 MI0025482 None CM000340.2 20393549 20393757 + -
ptc-MIR7824 MI0025483 None CM000349.2 7256997 7257111 - -
ptc-MIR7825 MI0025484 None CM000339.2 14588776 14589047 - -
ptc-MIR1444d MI0025485 None CM000346.2 11417598 11417684 - -
ptc-MIR1444e MI0025486 None None None -
ptc-MIR7826 MI0025487 None CM000352.2 2500220 2500318 - -
ptc-MIR7828 MI0025488 None CM000337.2 35822741 35822925 - -
ptc-MIR7830 MI0025489 None CM000351.2 5977842 5977957 + -
ptc-MIR7831 MI0025490 None CM000346.2 2022789 2023023 + -
ptc-MIR3627b MI0025491 None CM000353.2 10888890 10889033 + -
ptc-MIR7833 MI0025492 None CM000349.2 3364782 3364868 + -
ptc-MIR7837 MI0025493 None CM000344.2 18609503 18609665 + -
ptc-MIR7838 MI0025494 None CM000342.2 9390506 9390758 - -
ptc-MIR7839 MI0025495 None CM000337.2 22901250 22901371 - -
ptc-MIR6459b MI0025496 None CM000339.2 9383296 9383382 - -
ptc-MIR7840 MI0025497 None CM000345.2 7737213 7737443 + -
ptc-MIR7841 MI0025498 None None None -
ptc-MIR7842 MI0025499 None CM000347.2 15209261 15209374 - -
ptc-MIR7813 MI0025500 None CM000347.2 1025164 1025342 + -
ptc-MIR7819 MI0025501 None CM000347.2 4410758 4410914 + -
ptc-MIR7821 MI0025502 None CM000349.2 797593 797704 - -
ptc-MIR7827 MI0025503 None CM000349.2 9970810 9970906 + -
ptc-MIR7829 MI0025504 None CM000351.2 14059579 14059742 - -
ptc-MIR7832 MI0025505 None CM000348.2 5445549 5445646 + -
ptc-MIR7834 MI0025506 None CM000347.2 535912 536007 - -
ptc-MIR7835 MI0025507 None CM000346.2 17756662 17756763 + -
ptc-MIR7836 MI0025508 None CM000341.2 9237322 9237483 - -
ptc-MIR159a MI0002195 None CM000348.2 4086335 4086517 - -
ptc-MIR159b MI0002196 None CM000351.2 4261680 4261866 + -
ptc-MIR159d MI0002198 None CM000350.2 6603532 6603725 + -
ptc-MIR159e MI0002199 None CM000350.2 6601853 6602044 + -
ptc-MIR159c MI0002200 None None None -
ptc-MIR160a MI0002201 None CM000337.2 43414059 43414160 + -
ptc-MIR160b MI0002202 None CM000344.2 2253371 2253468 - -
ptc-MIR160c MI0002203 None CM000346.2 19585212 19585309 + -
ptc-MIR160d MI0002204 None CM000347.2 17793833 17793935 - -
ptc-MIR160e MI0002205 None CM000342.2 167623 167722 + -
ptc-MIR160f MI0002206 None CM000352.2 120174 120273 + -
ptc-MIR160g MI0002207 None CM000350.2 13103115 13103212 - -
ptc-MIR160h MI0002208 None CM000352.2 6921900 6921997 - -
ptc-MIR164a MI0002212 None CM000338.2 16570527 16570611 + -
ptc-MIR164b MI0002213 None CM000342.2 8032134 8032295 + -
ptc-MIR164c MI0002214 None CM000349.2 945053 945134 - -
ptc-MIR164d MI0002215 None CM000350.2 9081111 9081209 + -
ptc-MIR164e MI0002216 None CM000352.2 12933923 12934077 + -
ptc-MIR164f MI0002217 None CM000339.2 8307292 8307381 + -
ptc-MIR167a MI0002235 None CM000338.2 3062198 3062286 - -
ptc-MIR167b MI0002236 None CM000338.2 3064788 3064883 - -
ptc-MIR167c MI0002237 None CM000341.2 22458162 22458250 + -
ptc-MIR167d MI0002238 None CM000341.2 22447920 22448024 + -
ptc-MIR167e MI0002239 None CM000341.2 3575879 3575969 + -
ptc-MIR167f MI0002240 None CM000346.2 10015916 10016002 - -
ptc-MIR167g MI0002241 None CM000344.2 10561904 10561989 + -
ptc-MIR167h MI0002242 None CM000349.2 2408396 2408486 + -
ptc-MIR168a MI0002243 None CM000339.2 4412270 4412429 - -
ptc-MIR168b MI0002244 None CM000340.2 22942209 22942344 - -
ptc-MIR169a MI0002245 None CM000337.2 3089790 3089954 - -
ptc-MIR169aa MI0002246 None None None -
ptc-MIR169ab MI0002247 None CM000343.2 6018895 6019001 - -
ptc-MIR169ac MI0002248 None CM000341.2 6551950 6552055 + -
ptc-MIR169ad MI0002249 None CM000343.2 6019640 6019740 - -
ptc-MIR169ae MI0002250 None CM000346.2 7227918 7228024 + -
ptc-MIR169af MI0002251 None CM000341.2 6547979 6548085 - -
ptc-MIR169b MI0002252 None CM000349.2 4145219 4145331 + -
ptc-MIR169c MI0002253 None CM000355.2 4971659 4971760 - -
ptc-MIR169d MI0002254 None CM000342.2 5569290 5569400 - -
ptc-MIR169e MI0002255 None CM000344.2 5476416 5476581 + -
ptc-MIR169f MI0002256 None CM000353.2 12354617 12354855 + -
ptc-MIR169g MI0002257 None None None -
ptc-MIR169h MI0002258 None CM000342.2 26618429 26618546 + -
ptc-MIR169i MI0002259 None CM000337.2 31302443 31302565 - -
ptc-MIR169j MI0002260 None CM000337.2 31302159 31302295 - -
ptc-MIR169k MI0002261 None CM000339.2 16015779 16015981 - -
ptc-MIR169l MI0002262 None CM000353.2 7526169 7526311 - -
ptc-MIR169m MI0002263 None CM000353.2 7526473 7526591 - -
ptc-MIR169n MI0002264 None None None -
ptc-MIR169o MI0002265 None CM000337.2 15560467 15560570 - -
ptc-MIR169p MI0002266 None None None -
ptc-MIR169q MI0002267 None CM000337.2 27741711 27741825 + -
ptc-MIR169r MI0002268 None CM000351.2 12082579 12082697 + -
ptc-MIR169s MI0002269 None None None -
ptc-MIR169t MI0002270 None CM000342.2 5556636 5556743 - -
ptc-MIR169u MI0002271 None CM000351.2 12074209 12074330 + -
ptc-MIR169v MI0002272 None CM000345.2 7559813 7559922 + -
ptc-MIR169w MI0002273 None CM000337.2 27741955 27742063 + -
ptc-MIR169x MI0002274 None CM000343.2 6023427 6023544 - -
ptc-MIR169y MI0002275 None CM000341.2 6551729 6551851 + -
ptc-MIR169z MI0002276 None None None -
ptc-MIR171a MI0002277 None CM000340.2 764743 764846 + -
ptc-MIR171b MI0002278 None None None -
ptc-MIR171c MI0002279 None CM000342.2 4686630 4686733 - -
ptc-MIR171d MI0002280 None None None -
ptc-MIR171e MI0002281 None CM000337.2 31797187 31797280 - -
ptc-MIR171f MI0002282 None CM000338.2 908813 908942 + -
ptc-MIR171g MI0002283 None CM000348.2 11044609 11044708 + -
ptc-MIR171h MI0002284 None CM000351.2 11748061 11748160 + -
ptc-MIR171i MI0002285 None CM000341.2 7776851 7776985 + -
ptc-MIR390a MI0002305 None CM000337.2 27693951 27694069 + -
ptc-MIR390b MI0002306 None CM000342.2 7867985 7868090 + -
ptc-MIR390c MI0002307 None CM000345.2 7516332 7516454 + -
ptc-MIR390d MI0002308 None CM000352.2 12564435 12564540 + -
ptc-MIR394a MI0002313 None CM000338.2 831734 831880 - -
ptc-MIR394b MI0002314 None CM000341.2 24701276 24701422 + -
ptc-MIR395a MI0002315 None CM000338.2 14667284 14667509 + -
ptc-MIR395b MI0002316 None CM000342.2 7424410 7424507 + -
ptc-MIR395c MI0002317 None CM000342.2 8406701 8406801 + -
ptc-MIR395d MI0002318 None CM000342.2 8410822 8410922 + -
ptc-MIR395e MI0002319 None CM000352.2 13792278 13792390 - -
ptc-MIR395f MI0002320 None None None -
ptc-MIR395g MI0002321 None CM000352.2 13793446 13793547 + -
ptc-MIR395h MI0002322 None None None -
ptc-MIR395i MI0002323 None CM000352.2 13797871 13797972 + -
ptc-MIR395j MI0002324 None None None -
ptc-MIR396a MI0002325 None CM000342.2 4636167 4636289 + -
ptc-MIR396b MI0002326 None None None -
ptc-MIR396c MI0002327 None CM000339.2 15576014 15576115 + -
ptc-MIR396d MI0002328 None CM000342.2 4642885 4643050 - -
ptc-MIR396e MI0002329 None None None -
ptc-MIR396f MI0002330 None CM000342.2 25199401 25199527 - -
ptc-MIR396g MI0002331 None CM000343.2 6411634 6411801 - -
ptc-MIR398a MI0002335 None CM000346.2 15683184 15683292 + -
ptc-MIR403a MI0002350 None CM000338.2 15394788 15394919 + -
ptc-MIR408 MI0002352 None CM000338.2 14802196 14802300 + -
ptc-MIR472a MI0002354 None CM000341.2 119630 119710 + -
ptc-MIR472b MI0002355 None CM000349.2 103712 103782 + -
ptc-MIR482a MI0002397 None CM000344.2 8028049 8028155 + -
ptc-MIR171k MI0005114 None CM000351.2 5060947 5061024 - -
ptc-MIR171l MI0007032 None CM000351.2 654599 654710 + -
ptc-MIR171m MI0007033 None CM000348.2 2197358 2197458 - -
ptc-MIR171j MI0007034 None None None -
ptc-MIR1444a MI0007037 None CM000344.2 9316673 9316761 - -
ptc-MIR1444b MI0007038 None CM000346.2 11417599 11417683 + -
ptc-MIR1444c MI0007039 None None None -
ptc-MIR1446a MI0007042 None CM000348.2 11674408 11674512 - -
ptc-MIR169ag MI0022041 None CM000345.2 12179585 12179758 + -
ptc-MIR395k MI0022045 None None None -
ptc-MIR482c MI0022048 None CM000353.2 13549387 13549557 - -



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