Stem-loop ptc-MIR6445a

Accession

MI0022020

Description

Populus trichocarpa ptc-MIR6445a precursor miRNA MIR6445

Gene
family

RF03933; MIR6445

Sequence

ucucuuugccacguugUUCAUUCCUCUUCCUAAAAUGGcuucuccuucaauuuuaaaaaaaauaaaaauuaaaggagaauccaauaugaaaugagaagcuauuuuaggaagggaaugaauacggugucgguguuauaagaga
((((((((.(((..((((((((((.(((((((((((((((((((.(((((((((....)))))..........(((...)))....))))..)))))))))))))))))))))))))))))..))).)).......))))))

Structure

      -------  c   gu          U                   -c    -----------------------     a 
ucucuu       ug cac  ugUUCAUUCC CUUCCUAAAAUGGcuucuc  uuca                       auuuu a
||||||       || |||  |||||||||| |||||||||||||||||||  ||||                       |||||  
agagaa       gc gug  auaaguaagg gaaggauuuuaucgaagag  aagu                       uaaaa a
      uauugug  u   gc          -                   ua    auaaccuaagaggaaauuaaaaa     a 

Annotation confidence Not enough data

Genome context

CM000348.2: 7706152-7706293 [-]

Mature ptc-miR6445a

• Accession: MIMAT0025248
• Description: Populus trichocarpa ptc-miR6445a mature miRNA
• Sequence: 17 - UUCAUUCCUCUUCCUAAAAUGG - 38
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233