Stem-loop ptc-MIR7828

Accession

MI0025488

Description

Populus trichocarpa ptc-MIR7828 precursor miRNA

Sequence

uuuuuuuaaaauGAUGACAUGGACACCAAAAUCuuacaagaauaaugguuaauguugugagugagcauaaaauuugggaugugaauauguguuucuuggguuaauuggugucauggcauaccuagagugauaaagaccuaauuuuuuuguaaguuuuugguguccaugucaucauuuaauggaua
........(((((((((((((((((((((((.((((((((((....((((.(((((.......)))))....((((((.((((..((((....((...........))...)))).))))))))))........)))).....)))))))))).)))))))))))))))))))))))........

Structure

uuuuuuua                       U          -uaau    aauguugugagugagcauaaaa      a    aa    uguu  uugg 
        aaauGAUGACAUGGACACCAAAA Cuuacaagaa     gguu                      uuuggg ugug  uaug    uc    g
        ||||||||||||||||||||||| ||||||||||     ||||                      |||||| ||||  ||||    ||    u
        uuuacuacuguaccugugguuuu gaauguuuuu     ccag                      agaucc auac  guac    gg    u
auagguaa                       u          uuaau    --------------aaauagug      -    -g    -ugu  uuaa 

Annotation confidence Not enough data

Genome context

CM000337.2: 35822741-35822925 [-]

Mature ptc-miR7828

• Accession: MIMAT0030388
• Description: Populus trichocarpa ptc-miR7828 mature miRNA
• Sequence: 13 - GAUGACAUGGACACCAAAAUC - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233