Stem-loop ptc-MIR7842

Accession

MI0025499

Description

Populus trichocarpa ptc-MIR7842 precursor miRNA

Sequence

ggaaauugauUAAAUCAAGCCCGGUACUUUUaauucauaugugaccccguaucaaaaguuuauggguugauaaguccaaaguugaaguacaagggcugguuuaauuaauuucca
(((((((((((((((((.((((.(((((((...((.((.(((.(.((((((.........)))))).).))).))...))...)))))))..))))))))))))))))))))).

Structure

-                 A    -G       Uaa  --c  a   g c      uca 
 ggaaauugauUAAAUCA GCCC  GUACUUU   uu   au ugu a cccgua   a
 ||||||||||||||||| ||||  |||||||   ||   || ||| | ||||||   a
 ccuuuaauuaauuuggu cggg  caugaag   aa   ug aua u ggguau   a
a                 -    aa       uug  acc  a   g u      uug 

Annotation confidence Not enough data

Genome context

CM000347.2: 15209261-15209374 [-]

Mature ptc-miR7842

• Accession: MIMAT0030399
• Description: Populus trichocarpa ptc-miR7842 mature miRNA
• Sequence: 11 - UAAAUCAAGCCCGGUACUUUU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233