Stem-loop ptc-MIR7841

Accession

MI0025498

Description

Populus trichocarpa ptc-MIR7841 precursor miRNA

Sequence

aagcuccauccauaagguuuuauguuugacagaaacccccucauguuuucaacccuaccgagguuuuuugucaagguuucugucaaauuuauauaguacaggguaggaaacaugaGGGGGUUGCUGUCAAGCAUAAaagcauuuggaugaugcuug
((((..((((((...(.(((((((((((((((.(((((((((((((((((.(((((((........((((.((.......)).))))........))..))))).))))))))))))))))).))))))))))))))).)...))))))..)))).

Structure

-    uc      uaa g               a                 a     --  cgagguuu    u  ag 
 aagc  caucca   g uuuuauguuugacag aacccccucauguuuuc acccu  ac        uuug ca  g
 ||||  ||||||   | ||||||||||||||| ||||||||||||||||| |||||  ||        |||| ||  u
 uucg  guaggu   c aaAAUACGAACUGUC UUGGGGGaguacaaagg uggga  ug        aaac gu  u
g    ua      uua g               G                 a     ca  auauauuu    u  cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR7841

• Accession: MIMAT0030398
• Description: Populus trichocarpa ptc-miR7841 mature miRNA
• Sequence: 116 - GGGGGUUGCUGUCAAGCAUAA - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233