Stem-loop ptc-MIR395d

Accession

MI0002318

Description

Populus trichocarpa ptc-MIR395d precursor miRNA

Literature search

5 open access papers mention ptc-MIR395d
(7 sentences)

Sequence

105 reads, 2.0 reads per million, 9 experiments

guguccccuagaGUUCCUCUGAGCACUUCAcugggaauuuccgaucaaaugaaagaguauuaucauuccuaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.(((((((......((........))........))))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    c       --uuccga  aaa 
 ug c cc  gaGUUCCUCUGAGCACUUCA ugggaau        uc   u
 || | ||  |||||||||||||||||||| |||||||        ||    
 ac g gg  CUCAAGGGGGUUUGUGAAGU auccuua        ag   g
-  u u  uc                    C       cuauuaug  aaa 

Annotation confidence Not enough data

Genome context

CM000342.2: 8410822-8410922 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR395d

Mature ptc-miR395d-5p

• Accession: MIMAT0055630
• Description: Populus trichocarpa ptc-miR395d-5p mature miRNA
• Sequence: 13 - GUUCCUCUGAGCACUUCA - 30
• Evidence: experimental ; unknown

Mature ptc-miR395d-3p

• Accession: MIMAT0002024
• Description: Populus trichocarpa ptc-miR395d-3p mature miRNA
• Sequence: 72 - CUGAAGUGUUUGGGGGAACUC - 92
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604