Stem-loop ptc-MIR395e

Accession

MI0002319

Description

Populus trichocarpa ptc-MIR395e precursor miRNA

Literature search

5 open access papers mention ptc-MIR395e
(7 sentences)

Sequence

133 reads, 2.0 reads per million, 9 experiments

cugucccccggaGUUUCCCUGACCACUUCACUggggcuauaauucuacucuucguguuuaaggguagaggcaacccuuccucaCUGAAGUGUUUGGGGGAACUCuggguggca
.((((.((((((((((((((((.(((((((.(((((......((((((((((.......)))))))))).........))))).))))))).)))))))))))))))).))))

Structure

c    c                C       C     ---cuauaa          cg 
 uguc cccggaGUUUCCCUGA CACUUCA Ugggg         uucuacucuu  u
 |||| |||||||||||||||| ||||||| |||||         ||||||||||  g
 acgg ggguCUCAAGGGGGUU GUGAAGU acucc         gagaugggaa  u
-    u                U       C     uucccaacg          uu 

Annotation confidence High

Genome context

CM000352.2: 13792278-13792390 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR395e

Mature ptc-miR395e-5p

• Accession: MIMAT0055631
• Description: Populus trichocarpa ptc-miR395e-5p mature miRNA
• Sequence: 13 - GUUUCCCUGACCACUUCACU - 32
• Evidence: experimental ; unknown

Mature ptc-miR395e-3p

• Accession: MIMAT0002025
• Description: Populus trichocarpa ptc-miR395e-3p mature miRNA
• Sequence: 84 - CUGAAGUGUUUGGGGGAACUC - 104
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604