Stem-loop ptc-MIR164d

Accession

MI0002215

Description

Populus trichocarpa ptc-MIR164d precursor miRNA

Literature search

9 open access papers mention ptc-MIR164d
(39 sentences)

Sequence

94496 reads, 1558.0 reads per million, 9 experiments

uggcucacgcUGGAGAAGCAGGGCACGUGCAaaauccuucucggcuuccagaugcugaugaagcacucuuugCACGUGCUCCCCUCCUCCAACaugagu
..(((((.(.(((((.((..(((((((((((((...(((((((((........))))).)))).....)))))))))))))..)).))))).).)))))

Structure

ug     c c     A  CA             --auc    -     uuc 
  gcuca g UGGAG AG  GGGCACGUGCAaa     cuuc ucggc   c
  ||||| | ||||| ||  |||||||||||||     |||| |||||    
  ugagu C ACCUC UC  CUCGUGCACguuu     gaag agucg   a
--     a A     C  CC             cucac    u     uag 

Annotation confidence High

Genome context

CM000350.2: 9081111-9081209 [+]

Mature ptc-miR164d-5p

• Accession: MIMAT0001921
• Description: Populus trichocarpa ptc-miR164d-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR164d-3p

• Accession: MIMAT0060820
• Description: Populus trichocarpa ptc-miR164d-3p mature miRNA
• Sequence: 73 - CACGUGCUCCCCUCCUCCAAC - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203