Stem-loop ptc-MIR167f

Accession

MI0002240

Description

Populus trichocarpa ptc-MIR167f precursor miRNA

Literature search

6 open access papers mention ptc-MIR167f
(45 sentences)

Sequence

3078 reads, 53.0 reads per million, 9 experiments

cucuaucaguUGAAGCUGCCAGCAUGAUCUuagccuuccuccuuuguugaggaaagaaacAGAUCAUGUGGCAGUUUCACCUGuugu
......(((.(((((((((((.((((((((...(.((((((.......)))))).)....))))))))))))))))))).)))....

Structure

cucuau   u           G        -uag c      cu 
      cag UGAAGCUGCCA CAUGAUCU    c uuccuc  u
      ||| ||||||||||| ||||||||    | ||||||  u
      GUC ACUUUGACGGU GUACUAGA    g aaggag  g
--uguu   C           -        caaa a      uu 

Annotation confidence High

Genome context

CM000346.2: 10015916-10016002 [-]

Mature ptc-miR167f-5p

• Accession: MIMAT0001946
• Description: Populus trichocarpa ptc-miR167f-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCU - 30
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR167f-3p

• Accession: MIMAT0022893
• Description: Populus trichocarpa ptc-miR167f-3p mature miRNA
• Sequence: 61 - AGAUCAUGUGGCAGUUUCACCUG - 83
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034