Stem-loop ptc-MIR7813

Accession

MI0025500

Description

Populus trichocarpa ptc-MIR7813 precursor miRNA

Sequence

232 reads, 4.0 reads per million, 9 experiments

caagguuaccAGCAACACUUGCAUUACCAAAacagcuucuucaacguuugaaguucuuuaaaguaccaaugcacucuggcaacucucuaaugcuuggacagucuccgauuauaaaucuuguaaggaguuuguagauccuugaagaaguuacuuUGGUAAUGCAAGUGUUGCUAAccuca
..(((((...(((((((((((((((((((((..((((((((((((.((((((....)))))))).((((.(((...(((.......))).)))))))((((.((((..((((((...)))))))))).)))).......))))))))))..))))))))))))))))))))))))))..

Structure

ca     acc                     ac          acguuugaaguucuuuaaaguaccaaugcacucuggcaacucucuaaugcuugg    u    ga      a 
  agguu   AGCAACACUUGCAUUACCAAA  agcuucuuca                                                      acag cucc  uuauaa  
  |||||   |||||||||||||||||||||  ||||||||||                                                      |||| ||||  |||||| u
  uccAA   UCGUUGUGAACGUAAUGGUuu  uugaagaagu                                                      uguu gagg  aauguu  
ac     ---                     ca          -----------------------------------------------uccuaga    u    --      c 

Annotation confidence High

Genome context

CM000347.2: 1025164-1025342 [+]

Mature ptc-miR7813-5p

• Accession: MIMAT0055701
• Description: Populus trichocarpa ptc-miR7813-5p mature miRNA
• Sequence: 11 - AGCAACACUUGCAUUACCAAA - 31
• Evidence: experimental ; unknown

Mature ptc-miR7813-3p

• Accession: MIMAT0030400
• Description: Populus trichocarpa ptc-miR7813-3p mature miRNA
• Sequence: 154 - UGGUAAUGCAAGUGUUGCUAA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233