Stem-loop ptc-MIR169t

Accession

MI0002270

Description

Populus trichocarpa ptc-MIR169t precursor miRNA MIR169_3

Gene
family

RF04243; MIR169_3

Literature search

9 open access papers mention ptc-MIR169t
(13 sentences)

Sequence

79 reads, 1.0 reads per million, 9 experiments

cuagaguccGAGCCAAGAAUGACUUGCCGGcaggcuagcauuugcuagcuacagggcaagauguaugcuaaagugacauuccgccagguuguucuuggcucuacuuug
.((((((..(((((((((((((((((.(((..(((((((....)))))))....((((.......))))...........))).))))))))))))))))).))))))

Structure

c      cc                 C   ----------------------------ca       a 
 uagagu  GAGCCAAGAAUGACUUG CGG                              ggcuagc u
 ||||||  ||||||||||||||||| |||                              |||||||  
 guuuca  cucgguucuuguuggac gcc                              ucgaucg u
-      -u                 c   uuacagugaaaucguauguagaacgggaca       u 

Annotation confidence Not enough data

Genome context

CM000342.2: 5556636-5556743 [-]

Mature ptc-miR169t-5p

• Accession: MIMAT0001976
• Description: Populus trichocarpa ptc-miR169t-5p mature miRNA
• Sequence: 10 - GAGCCAAGAAUGACUUGCCGG - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604