Stem-loop ptc-MIR394b

Accession

MI0002314

Description

Populus trichocarpa ptc-MIR394b precursor miRNA

Literature search

1 open access papers mention ptc-MIR394b
(2 sentences)

Sequence

146801 reads, 2468.0 reads per million, 9 experiments

ucauguggauuuagcaaaggguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCUaucuuuagaaauuagaauaucucuuucauauggaggugggcauacugccaaccgAGCUCUGUUGGUCUCUCUUUGUaaaacccucguga
(((((.((.(((.((((((((...((.(((((((((.((((((...(((((((((((.......(((.((......)).))).......)))))))))))...))))))..))))))))).))...)))))))).))).)).)))))

Structure

     u  a   a        uuu  u         -a      UUC           Uaucuuu   a  ua 
ucaug gg uuu gcaaaggg   cu acagaguuu  UUGGCA   UGUCCACCUCC       aga au  g
||||| || ||| ||||||||   || |||||||||  ||||||   |||||||||||       ||| ||   
agugc cc aaa UGUUUCUC   GG UGUCUCGAg  aaccgu   acggguggagg       ucu ua  a
     u  c   a        UCU  U         cc      cau           uauacuu   c  ua 

Annotation confidence Low

Genome context

CM000341.2: 24701276-24701422 [+]

Mature ptc-miR394b-5p

• Accession: MIMAT0002020
• Description: Populus trichocarpa ptc-miR394b-5p mature miRNA
• Sequence: 38 - UUGGCAUUCUGUCCACCUCCU - 58
• Evidence: not_experimental

Mature ptc-miR394b-3p

• Accession: MIMAT0006784
• Description: Populus trichocarpa ptc-miR394b-3p mature miRNA
• Sequence: 113 - AGCUCUGUUGGUCUCUCUUUGU - 134
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151