Stem-loop ptc-MIR6480

Accession

MI0021997

Description

Populus trichocarpa ptc-MIR6480 precursor miRNA

Sequence

cucgcaaccucugucucggaacaauaguucaaucuuuucagcaaccuuaaauagugggcuauuuaaggUUGCUGAAACGAUUGAACUAUugugacuugugag
(((((((.....(((.....((((((((((((((.(((((((((((((((((((....))))))))))))))))))).))))))))))))))))))))))))

Structure

       ccucu   ucgga              u                   u 
cucgcaa     guc     acaauaguucaauc uuucagcaaccuuaaauag g
|||||||     |||     |||||||||||||| |||||||||||||||||||  
gaguguu     cag     uguUAUCAAGUUAG AAAGUCGUUggaauuuauc g
       -----   -----              C                   g 

Annotation confidence Not enough data

Genome context

CM000345.2: 10834993-10835094 [+]

Mature ptc-miR6480

• Accession: MIMAT0025223
• Description: Populus trichocarpa ptc-miR6480 mature miRNA
• Sequence: 69 - UUGCUGAAACGAUUGAACUAU - 89
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233