Stem-loop ptc-MIR3627a

Accession

MI0022035

Description

Populus trichocarpa ptc-MIR3627a precursor miRNA

Literature search

1 open access papers mention ptc-MIR3627a
(3 sentences)

Sequence

gguuuggggaggggaguUCUGUCGCUGGAAAGAUGGUACcuagggcugcauauuaauguguauagcaagcaauaggcaccaucuucccgcgacggaacuccccucuaaccucuacc
(((..((((((((((((((((((((.((((.((((((.((((..(((((((((......)))).)).)))..)))).)))))))))).)))))))))))))))))...)))..)))

Structure

   uu   ---                 U    A      A    gg   -  -    ua 
ggu  ggg   gaggggaguUCUGUCGC GGAA GAUGGU Ccua  gcu gc auau  a
|||  |||   ||||||||||||||||| |||| |||||| ||||  ||| || ||||   
cca  ucc   cuccccucaaggcagcg ccuu cuacca ggau  cga cg uaug  u
   uc   aau                 c    -      c    aa   a  a    ug 

Annotation confidence Not enough data

Genome context

CM000353.2: 10902822-10902937 [+]

Mature ptc-miR3627a

• Accession: MIMAT0025263
• Description: Populus trichocarpa ptc-miR3627a mature miRNA
• Sequence: 18 - UCUGUCGCUGGAAAGAUGGUAC - 39
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233