Stem-loop ptc-MIR169y

Accession

MI0002275

Description

Populus trichocarpa ptc-MIR169y precursor miRNA

Literature search

9 open access papers mention ptc-MIR169y
(12 sentences)

Sequence

ucuuguuuagUAGCCAUGGAUGAAUUGCCUGcuuccaaaaugaggugucaagccgagauaaacauacaaguuugaucccucauugggguucccaggcagucaucagcuuggcuaacuugacag
...((((.((((((((..(((((.(((((((...((..(((((((.(((((((................))))))).)))))))..))....))))))))))))....))))).))).)))).

Structure

ucu    u   -     --UG     A       -cuu  aa       u       cgagaua 
   uguu agU AGCCA    GAUGA UUGCCUG    cc  aaugagg gucaagc       a
   |||| ||| |||||    ||||| |||||||    ||  ||||||| |||||||        
   acag uca ucggu    cuacu gacggac    gg  uuacucc uaguuug       a
--g    u   a     ucga     -       ccuu  gg       c       aacauac 

Annotation confidence Not enough data

Genome context

CM000341.2: 6551729-6551851 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169y

Mature ptc-miR169y

• Accession: MIMAT0001981
• Description: Populus trichocarpa ptc-miR169y mature miRNA
• Sequence: 11 - UAGCCAUGGAUGAAUUGCCUG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604