Stem-loop ptc-MIR6445b

Accession

MI0022028

Description

Populus trichocarpa ptc-MIR6445b precursor miRNA MIR6445

Gene
family

RF03933; MIR6445

Sequence

10885 reads, 183.0 reads per million, 9 experiments

ggcugcuucuuuuucucucugggcacguugUUCAUUCCUCUUCCUAAAAUGGcuucuucuccuuuaguuguugcaauuauaggagaggagaauccAUUUUAGGAAGGGAAUGAAUAcugugucgguuuuacgagggagacaauc
...........(((((((((.((((((.((((((((((.(((((((((((((.((((((((((.((((((...)))))).))))))))))...))))))))))))))))))))))).)))))).)......)))))))).....

Structure

ggcugcuucuu        ------ g      u          U             --c          u      u 
           uuucucuc      u ggcacg ugUUCAUUCC CUUCCUAAAAUGG   uucuucuccu uaguug  
           ||||||||      | |||||| |||||||||| |||||||||||||   |||||||||| |||||| u
           agagggag      g cugugu AUAAGUAAGG GAAGGAUUUUAcc   gaggagagga auuaac  
------cuaac        cauuuu g      c          -             uaa          u      g 

Annotation confidence High

Genome context

CM000351.2: 8556696-8556839 [+]

Mature ptc-miR6445b-5p

• Accession: MIMAT0025256
• Description: Populus trichocarpa ptc-miR6445b-5p mature miRNA
• Sequence: 31 - UUCAUUCCUCUUCCUAAAAUGG - 52
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR6445b-3p

• Accession: MIMAT0055685
• Description: Populus trichocarpa ptc-miR6445b-3p mature miRNA
• Sequence: 96 - AUUUUAGGAAGGGAAUGAAUA - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233