Stem-loop ptc-MIR169e

Accession

MI0002255

Description

Populus trichocarpa ptc-MIR169e precursor miRNA

Literature search

9 open access papers mention ptc-MIR169e
(13 sentences)

Sequence

1350 reads, 23.0 reads per million, 9 experiments

uaucguggcgCAGCCAAGGAUGACUUGCCGGcaagcuccucacacguauuuuguuucgaguuucauugauggcauugcuagauagauauauaugauuucguaauucaaacuuuugggccauugucugguugaaaugaucGGCAAGCUGUCCUUGGCUAugucucua
....(.((((.(((((((((((.((((((((...................(((((((((.(.....(((((((....(((((........((((....)))).........))))))))))))...).))))))))))))))))).))))))))))).)))).)..

Structure

uauc u    C           A        caagcuccucacacguauu         g uucau       auug     -uagauaua    a 
    g ggcg AGCCAAGGAUG CUUGCCGG                   uuguuucga u     ugauggc    cuaga         uaug u
    | |||| ||||||||||| ||||||||                   ||||||||| |     |||||||    |||||         ||||  
    c cugu UCGGUUCCUGU GAACGGcu                   aguaaaguu g     guuaccg    gguuu         augc u
--au u    A           C        -------------------         g --ucu       ----     ucaaacuua    u 

Annotation confidence High

Genome context

CM000344.2: 5476416-5476581 [+]

Mature ptc-miR169e-5p

• Accession: MIMAT0001961
• Description: Populus trichocarpa ptc-miR169e-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature ptc-miR169e-3p

• Accession: MIMAT0055602
• Description: Populus trichocarpa ptc-miR169e-3p mature miRNA
• Sequence: 140 - GGCAAGCUGUCCUUGGCUA - 158
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604