Stem-loop ptc-MIR160a

Accession

MI0002201

Description

Populus trichocarpa ptc-MIR160a precursor miRNA

Literature search

6 open access papers mention ptc-MIR160a
(23 sentences)

Sequence

4261 reads, 72.0 reads per million, 9 experiments

acauggguuaUGCCUGGCUCCCUGUAUGCCAcaagcaaagaccaaucuuuuguuuuagauuggcuguugccggugGCGUGCGAGGAGCCAAGCAUAcucucu
....((((.((((.(((((((.((((((((((..((((((.(((((((........))))))))).))))..)))))))))).))))))).))))))))...

Structure

acau    u    C       C          aa    -  a       uuu 
    gggu aUGC UGGCUCC UGUAUGCCAc  gcaa ag ccaaucu   g
    |||| |||| ||||||| ||||||||||  |||| || |||||||    
    cucA UACG ACCGAGG GCGUGCGgug  cguu uc gguuaga   u
-ucu    -    A       A          gc    g  -       uuu 

Annotation confidence High

Genome context

CM000337.2: 43414059-43414160 [+]

Mature ptc-miR160a-5p

• Accession: MIMAT0001907
• Description: Populus trichocarpa ptc-miR160a-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR160a-3p

• Accession: MIMAT0055570
• Description: Populus trichocarpa ptc-miR160a-3p mature miRNA
• Sequence: 76 - GCGUGCGAGGAGCCAAGCAUA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203