Stem-loop ptc-MIR536

Accession

MI0022032

Description

Populus trichocarpa ptc-MIR536 precursor miRNA

Sequence

aggaagguuucagaCGCUCGCCAGCGUUGCACCACCaaaacuugcaaaaguucugauggugccacgcugugugcgucuaaaaucucuu
.(((.(((((.((((((.(((.(((((.((((((.((.(((((....))))).)).)))))).)))))))).)))))).)))))))).

Structure

a   a     c      U   C     U      C  a     g 
 gga gguuu agaCGC CGC AGCGU GCACCA Ca aacuu c
 ||| ||||| |||||| ||| ||||| |||||| || |||||  
 ucu cuaaa ucugcg gug ucgca cguggu gu uugaa a
u   -     a      u   -     c      a  c     a 

Annotation confidence Not enough data

Genome context

CM000337.2: 10455706-10455793 [-]

Mature ptc-miR536

• Accession: MIMAT0025260
• Description: Populus trichocarpa ptc-miR536 mature miRNA
• Sequence: 15 - CGCUCGCCAGCGUUGCACCACC - 36
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233