Stem-loop ptc-MIR7838

Accession

MI0025494

Description

Populus trichocarpa ptc-MIR7838 precursor miRNA

Sequence

auaugaggaauuccuccuacccaacacguggcaaucucuuggacugucauuuguuggacaacauuuguuauuuuagaaauauauuugauaucaaaaucauacauguauaauaaaaaggguaaguuucuguuuaccaaaaagauuauggcaaaacaaaugguuuuuguugacaaaaaauaaaaagcaauuaaugcuacccaugcaugguggguugagagacugACAUGUGCUGGGUAGGAGGAAuuccuacuac
.....((((((((((((((((((.((((((.((.((((((....((((........)))).((((((((................((((......))))....((((((((......((((((......))))))......))))).))).))))))))..(((((((.......)))))))((((.....))))((((((.....)))))).)))))).)).)))))).)))))))))))))))))).....

Structure

auaug                  a      g  a      ---------------------------------ggacugucauuuguuggacaa        auuuuagaaauauauuugauaucaaaaucauaca   -     aaaaag      uu 
     aggaauuccuccuaccca cacgug ca ucucuu                                                      cauuuguu                                  ugu auaau      gguaag  u
     |||||||||||||||||| |||||| || ||||||                                                      ||||||||                                  ||| |||||      ||||||   
     uccuuAAGGAGGAUGGGU GUGUAC gu agagag                                                      guaaacaa                                  acg uauua      ccauuu  c
cauca                  C      A  c      uugggugguacguacccaucguaauuaacgaaaaauaaaaaacaguuguuuuug        ---------------------------------a   g     gaaaaa      gu 

Annotation confidence Not enough data

Genome context

CM000342.2: 9390506-9390758 [-]

Mature ptc-miR7838

• Accession: MIMAT0030394
• Description: Populus trichocarpa ptc-miR7838 mature miRNA
• Sequence: 223 - ACAUGUGCUGGGUAGGAGGAA - 243
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233