miRBase entry: ptc-MIR169ac

Stem-loop ptc-MIR169ac


Accession
MI0002248
Description
Populus trichocarpa ptc-MIR169ac precursor miRNA

Literature search
9 open access papers mention ptc-MIR169ac
(12 sentences)

Sequence

ucuuguuugUAGCCAAGGACGACUUGCCCAcaauauguaucgugagcguuuccaauuugcaaccucauacuugguuguuuugggcagucuccuuggcuaugcagau
..((((..(((((((((((.((((.(((((.((((......(((((.(((.(......).)))))))).......)))).))))))))))))))))))))))))..

Structure
uc    uu           C    U     c    -uguauc     c   u ca 
  uugu  gUAGCCAAGGA GACU GCCCA aaua       gugag guu c  a
  ||||  ||||||||||| |||| ||||| ||||       ||||| ||| |   
  gacg  uaucgguuccu cuga cgggu uugu       uacuc caa g  u
ua    --           -    -     u    ugguuca     -   c uu 


Annotation confidence Not enough data
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Genome context
CM000341.2: 6551950-6552055 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR169ac
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169ac

Accession MIMAT0001954
Description Populus trichocarpa ptc-miR169ac mature miRNA
Sequence 10 - UAGCCAAGGACGACUUGCCCA - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604