Stem-loop ptc-MIR169ac

Accession

MI0002248

Description

Populus trichocarpa ptc-MIR169ac precursor miRNA

Literature search

9 open access papers mention ptc-MIR169ac
(13 sentences)

Sequence

61642 reads, 1083.0 reads per million, 9 experiments

ucuuguuugUAGCCAAGGACGACUUGCCCACaauauguaucgugagcguuuccaauuugcaaccucauacuugguuguuuugGGCAGUCUCCUUGGCUAUGcagau
..((((..(((((((((((.((((.(((((.((((......(((((.(((.(......).)))))))).......)))).))))))))))))))))))))))))..

Structure

uc    uu           C    U     C    -uguauc     c   u ca 
  uugu  gUAGCCAAGGA GACU GCCCA aaua       gugag guu c  a
  ||||  ||||||||||| |||| ||||| ||||       ||||| ||| |   
  gacG  UAUCGGUUCCU CUGA CGGgu uugu       uacuc caa g  u
ua    --           -    -     u    ugguuca     -   c uu 

Annotation confidence High

Genome context

CM000341.2: 6551950-6552055 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169ac

Mature ptc-miR169ac-5p

• Accession: MIMAT0001954
• Description: Populus trichocarpa ptc-miR169ac-5p mature miRNA
• Sequence: 10 - UAGCCAAGGACGACUUGCCCAC - 31
• Evidence: not_experimental

Mature ptc-miR169ac-3p

• Accession: MIMAT0055598
• Description: Populus trichocarpa ptc-miR169ac-3p mature miRNA
• Sequence: 83 - GGCAGUCUCCUUGGCUAUG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604