Stem-loop ptc-MIR169w

Accession

MI0002273

Description

Populus trichocarpa ptc-MIR169w precursor miRNA

Literature search

9 open access papers mention ptc-MIR169w
(12 sentences)

Sequence

cguguuuggUAGCCAAGGAUGACUUGCCCAcucuauggaaagaguucucaagcacacggcagagaggacccuuacuucggcucugggcagucaccuuggcuaugcugac
...(((..((((((((((.(((((.(((((.....(((((((.((((((..((.....))...)))))).)))..))))....))))))))))))))))))))...)))

Structure

cgu   -ug          A     U     cucua    --   a      -aa  a 
   guu   gUAGCCAAGG UGACU GCCCA     ugga  aag guucuc   gc c
   |||   |||||||||| ||||| |||||     ||||  ||| ||||||   || a
   cag   uaucgguucc acuga cgggu     gcuu  uuc caggag   cg c
---   ucg          -     -     -cucg    ca   c      aga  g 

Annotation confidence Not enough data

Genome context

CM000337.2: 27741955-27742063 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR169w

Mature ptc-miR169w

• Accession: MIMAT0001979
• Description: Populus trichocarpa ptc-miR169w mature miRNA
• Sequence: 10 - UAGCCAAGGAUGACUUGCCCA - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604