Stem-loop ptc-MIR159c

Accession

MI0002200

Description

Populus trichocarpa ptc-MIR159c precursor miRNA

Literature search

9 open access papers mention ptc-MIR159c
(49 sentences)

Sequence

264 reads, 5.0 reads per million, 9 experiments

gaggcucaauggagcucuccccacuccaugccugaaaggaguucgaugguagaccauggcugcuaguucaugaauacccuugggugcgcagaauuagcaacggugcaggcgaaguugcgcaggcuaagggucugcaugaccuaggagacgugguuacccugacccuuuuuguAUUGGAGUGAAGGGAGCUCGAuggucuuu
((((((..((.((((((((..((((((((((..((((((.(((....(((.(((((((.((.((((.(((((...((((((((.(((((((.....((..........))....)))))))..))))))))...))))).)))).)).))))))))))..))))))))).))).)))))))..)))))))).)))))))).

Structure

-      ca  g        cc       -   cu      a   cgau   a       g  g    u     aau        -g       aauua  aacg 
 gaggcu  au gagcucuc  cacucca ugc  gaaagg guu    ggu gaccaug cu cuag ucaug   acccuugg  ugcgcag     gc    g
 ||||||  || ||||||||  ||||||| |||  |||||| |||    ||| ||||||| || |||| |||||   ||||||||  |||||||     ||     
 uucugg  uA CUCGAGGG  GUGAGGU Aug  uuuucc cag    cca uuggugc ga gauc aguac   ugggaauc  acgcguu     cg    u
u      --  G        AA       U   -u      -   --uc   -       a  g    c     guc        gg       -gaag  gacg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR159c-3p

• Accession: MIMAT0001906
• Description: Populus trichocarpa ptc-miR159c-3p mature miRNA
• Sequence: 173 - AUUGGAGUGAAGGGAGCUCGA - 193
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604