Stem-loop ptc-MIR169af

Accession

MI0002251

Description

Populus trichocarpa ptc-MIR169af precursor miRNA

Literature search

9 open access papers mention ptc-MIR169af
(13 sentences)

Sequence

100739 reads, 1765.0 reads per million, 9 experiments

cuuguuuggUAGCCAAGGACGACUUGCCCAccaccaucucaguuggguccaauauauuacugggcaccuuccauuugguuuUGGGCAAGCACCUUGGCUAGuugaca
..((((.(.(((((((((..(.((((((((..((((.....(..(((((((.........))))).))..)....))))..))))))))).))))))))).).))))

Structure

cu    u g         AC A        cc    ucuca uu  -     aua 
  uguu g UAGCCAAGG  G CUUGCCCA  acca     g  gg gucca   u
  |||| | |||||||||  | ||||||||  ||||     |  || |||||   a
  acag u AUCGGUUCC  C GAACGGGU  uggu     c  cc cgggu   u
--    u G         -A -        uu    -uuac uu  a     cau 

Annotation confidence High

Genome context

CM000341.2: 6547979-6548085 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169af

Mature ptc-miR169af-5p

• Accession: MIMAT0001957
• Description: Populus trichocarpa ptc-miR169af-5p mature miRNA
• Sequence: 10 - UAGCCAAGGACGACUUGCCCA - 30
• Evidence: not_experimental

Mature ptc-miR169af-3p

• Accession: MIMAT0055600
• Description: Populus trichocarpa ptc-miR169af-3p mature miRNA
• Sequence: 82 - UGGGCAAGCACCUUGGCUAG - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604