Stem-loop ptc-MIR6459a

Accession

MI0021965

Description

Populus trichocarpa ptc-MIR6459a precursor miRNA MIR6459

Gene
family

RF03908; MIR6459

Literature search

1 open access papers mention ptc-MIR6459a
(1 sentences)

Sequence

61362 reads, 1024.0 reads per million, 9 experiments

ugcagaguagaagucgAGCUCAAGCACAAAUUCGAUCUugcuuaacaagguaccggcaaagucagaUCGAAUUUGGGCUUGAGAUUgucuucuucguugca
(((((.(.(((((.(((.(((((((.((((((((((((.((((..(........)...)))).)))))))))))).))))))).))).))))).).)))))

Structure

     a u     u   G       A            u    -aa aag 
ugcag g agaag cgA CUCAAGC CAAAUUCGAUCU gcuu   c   g
||||| | ||||| ||| ||||||| |||||||||||| ||||   |    
acguu c ucuuc gUU GAGUUCG GUUUAAGCUaga ugaa   g   u
     g u     u   A       G            c    acg cca 

Annotation confidence High

Genome context

CM000339.2: 9383289-9383389 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR6459a

Mature ptc-miR6459a-5p

• Accession: MIMAT0025184
• Description: Populus trichocarpa ptc-miR6459a-5p mature miRNA
• Sequence: 17 - AGCUCAAGCACAAAUUCGAUCU - 38
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR6459a-3p

• Accession: MIMAT0025185
• Description: Populus trichocarpa ptc-miR6459a-3p mature miRNA
• Sequence: 67 - UCGAAUUUGGGCUUGAGAUU - 86
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233